P-value Bar Plot

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Tool Introduction & Use Cases

P-value Bar Plot is primarily used for bioinformatics analysis.

Bar plot with P-value gradient for enrichment analysis results

Main Use Cases:

  • Explore data patterns and support subsequent in-depth analysis

Key Features:

  • Standardized processing and result export
  • Key charts and table output
  • Can be used as input for subsequent analysis

Parameter Details

ParameterMeaning & RecommendationsSettings
Enrichment Result File包含Term、Count、FDR三列的富集分析结果
Required
Default: None
p value columnP-value Threshold: This is the statistical significance threshold. Only genes/proteins with P-values below this threshold are considered significantly changed, not just random fluctuations. Recommendation: Typically set to 0.05 or 0.01. Lower values are more stringent and reliable but may miss some potentially important molecules.
Required
Default: FDR
Term columnColor Palette: Improves figure readability and distinguishes groups. Recommendation: Use higher contrast palettes for many categories; use gradients for continuous variables.
Required
Default: Term
Count columnColor Palette: Improves figure readability and distinguishes groups. Recommendation: Use higher contrast palettes for many categories; use gradients for continuous variables.
Required
Default: Count

Input File Requirements

Please ensure your input file format is correct, as this is fundamental to successful analysis. Typically, you need to provide a data matrix containing gene/protein expression values.

This tool does not currently provide sample files. Please refer to the common format: typically CSV or TXT files with the first column as gene/protein IDs, followed by expression values for each sample.

Frequently Asked Questions

Q: How long does the analysis take?

A: Estimated execution time is approximately 10 seconds, depending on your data size and current server load.

Q: What if the analysis fails?

A: If the analysis fails, your credits will not be deducted. First, check if your input file format matches the sample file, or adjust parameters based on error messages. If the problem persists, please contact us through the page's feedback function.

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